Ps  Group A                    P  W  D  L   F / A     Pts
  1. Valencia                   6  4  1  1  12 - 7     13
  2. Swansea                    6  2  2  2   6 - 4      8
  3. Kuban                      6  1  3  2   7 - 7      6
  4. Sankt Gallen               6  2  0  4   6 - 13     6

 Ps  Group B                    P  W  D  L   F / A     Pts
  1. Ludogorec                  6  5  1  0  11 - 2     16
  2. Chernomorets               6  3  1  2   6 - 6     10
  3. P.S.V.                     6  2  1  3   4 - 5      7
  4. Dinamo Zagreb              6  0  1  5   3 - 11     1

 Ps  Group C                    P  W  D  L   F / A     Pts
  1. Salzburg                   6  6  0  0  15 - 3     18
  2. Esbjerg                    6  4  0  2   8 - 8     12
  3. Elfsborg                   6  1  1  4   5 - 10     4
  4. Standard de L              6  0  1  5   6 - 13     1

 Ps  Group D                    P  W  D  L   F / A     Pts
  1. Rubin                      6  4  2  0  14 - 4     14
  2. Maribor                    6  2  1  3   9 - 12     7
  3. Zulte-Waregem              6  2  1  3   4 - 10     7
  4. Wigan                      6  1  2  3   6 - 7      5

 Ps  Group E                    P  W  D  L   F / A     Pts
  1. Fiorentina                 6  5  1  0  12 - 3     16
  2. Dnipro                     6  4  0  2  11 - 5     12
  3. Pacos Ferreira             6  0  3  3   1 - 8      3
  4. Pandurii                   6  0  2  4   3 - 11     2

 Ps  Group F                    P  W  D  L   F / A     Pts
  1. Eintracht                  6  5  0  1  13 - 4     15
  2. Maccabi T-A                6  3  2  1   7 - 5     11
  3. APOEL                      6  1  2  3   3 - 8      5
  4. Bordeaux                   6  1  0  5   4 - 10     3

 Ps  Group G                    P  W  D  L   F / A     Pts
  1. Racing Genk                6  4  2  0  10 - 5     14
  2. Dynamo Kiev                6  3  1  2  11 - 7     10
  3. Rapid Wien                 6  1  3  2   8 - 10     6
  4. Thun                       6  1  0  5   3 - 10     3

 Ps  Group H                    P  W  D  L   F / A     Pts
  1. Sevilla                    6  3  3  0   9 - 4     12
  2. Slovan Liberec             6  2  3  1   9 - 8      9
  3. Freiburg                   6  1  3  2   5 - 8      6
  4. Estoril                    6  0  3  3   5 - 8      3

 Ps  Group I                    P  W  D  L   F / A     Pts
  1. Lyon                       6  3  3  0   6 - 3     12
  2. Betis Sevilla              6  2  3  1   3 - 2      9
  3. Guimaraes                  6  1  2  3   6 - 5      5
  4. Rijeka                     6  0  4  2   2 - 7      4

 Ps  Group J                    P  W  D  L   F / A     Pts
  1. Trabzonspor                6  4  2  0  13 - 6     14
  2. Lazio                      6  3  3  0   8 - 4     12
  3. Apollon                    6  1  1  4   5 - 10     4
  4. Legia                      6  1  0  5   2 - 8      3

 Ps  Group K                    P  W  D  L   F / A     Pts
  1. Tottenham                  6  6  0  0  15 - 2     18
  2. Anzhi                      6  2  2  2   4 - 7      8
  3. Serif                      6  1  3  2   5 - 6      6
  4. Tromso                     6  0  1  5   1 - 10     1

 Ps  Group L                    P  W  D  L   F / A     Pts
  1. AZ                         6  3  3  0   8 - 4     12
  2. PAOK                       6  3  3  0  10 - 6     12
  3. Maccabi Haifa              6  1  2  3   6 - 9      5
  4. Shakhter                   6  0  2  4   5 - 10     2